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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30220349_30223890_F

Intron Information:

Intron Rank:
140987
Intron Class:
major
Intron Phase:
Intron Coordinates:
30220349 - 30223890
Intron Length:
3542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGGGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATGTCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
61.7
0.26
1.1
53.1
45.9
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
59.8
0.39
1.6
73.44
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018752
30219435 - 30224543
5109