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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30231338_30231581_R

Intron Information:

Intron Rank:
129914
Intron Class:
major
Intron Phase:
Intron Coordinates:
30231338 - 30231581
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGT
5'SS Class:
major
3'SS Sequence:
ATTCTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TTTCTATCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
71.8
40.6
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
81.1
0.7
0.9
76.3
37.2
Minor 5ss
40.9
-1
3.1
59.4
45
Minor BPS
48.1
-0
2
74.89
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017081
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034987
30224975 - 30232220
7246