Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30333597_30336714_R

Intron Information:

Intron Rank:

151336

Intron Class:

major

Intron Phase:

Intron Coordinates:

30333597 - 30336714

Intron Length:

3118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAATTTTA

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TGGTCTTCATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

76.9

34.6

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

97.3

1.06

0.5

96.6

11.5

Minor 5ss

43.4

-0.7

2.8

46.3

Minor BPS

54.2

0.21

1.8

72.82

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026640

30331922 - 30337305

5384