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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30356522_30356967_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30356522 - 30356967
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAACCA
5'SS Class:
major
3'SS Sequence:
TCTGGGATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCTGGGATT
Flanking Amino Acid:
LKKNPNEVTKSVQQLACEDH
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
60.3
38.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
67
0.38
1
62.6
43.1
Minor 5ss
37.7
-1.4
3.1
48.9
46.8
Minor BPS
50.5
0.1
2.2
79.16
37.6

Associated Gene:

Gene:
FAM204A
Ensembl Gene ID:
ENSAPLG00000006401
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006630
30343322 - 30358840
15519