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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30357005_30357502_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30357005 - 30357502
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TAATGCTGGATT
Flanking Amino Acid:
KGRKRKRGRKEKLKKNPNEV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
77.7
31.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.4
0.82
0.6
81
31
Minor 5ss
40
-1.1
2.7
51
45.5
Minor BPS
49.5
0.04
1.9
69.37
41.6

Associated Gene:

Gene:
FAM204A
Ensembl Gene ID:
ENSAPLG00000006401
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006630
30343322 - 30358840
15519