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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30357594_30358525_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30357594 - 30358525
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
CTTACTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACTC
Flanking Amino Acid:
PPGVSLDMWNKFLELQKKNR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
74.3
36.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
78.8
0.65
0.8
73.5
31.3
Minor 5ss
35.9
-1.6
3.2
49.3
40.4
Minor BPS
64.2
0.42
1.7
69.44
42.9

Associated Gene:

Gene:
FAM204A
Ensembl Gene ID:
ENSAPLG00000006401
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006630
30343322 - 30358840
15519