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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30415745_30416461_R

Intron Information:

Intron Rank:
151732
Intron Class:
major
Intron Phase:
Intron Coordinates:
30415745 - 30416461
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.5
0.66
0.8
77
31.7
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029190
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047779
30415551 - 30416703
1153
ENSAPLT00000025556
30415551 - 30417796
2246