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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30518169_30521394_R

Intron Information:

Intron Rank:
142093
Intron Class:
major
Intron Phase:
Intron Coordinates:
30518169 - 30521394
Intron Length:
3226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TTTTGGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTGTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.6
0.78
0.9
81.2
36.5
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
48.6
-0
2.2
74.31
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023787
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045340
30517642 - 30522067
4426