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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30549545_30552447_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30549545 - 30552447
Intron Length:
2903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCAAGTGAACA
Flanking Amino Acid:
QRELMQNGFARGDQSRKRAG
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.5
0.64
0.7
72.3
32.4
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
45.4
-0.3
2.3
62.1
43.6

Associated Gene:

Gene:
CACUL1
Ensembl Gene ID:
ENSAPLG00000006462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006709
30548043 - 30592608
44566