Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30552587_30555873_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30552587 - 30555873

Intron Length:

3287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAACG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTTTCCTTACAG

Flanking Amino Acid:

IVKGLYTLRPEWVQMAPALF

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

71.4

38.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

0.83

0.8

80.7

31.5

Minor 5ss

33.1

-1.9

2.9

41.1

44.9

Minor BPS

68.9

0.46

1.8

76.73

40.6

Associated Gene:

Gene:

CACUL1

Ensembl Gene ID:

ENSAPLG00000006462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006709

30548043 - 30592608

44566