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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30555964_30567268_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30555964 - 30567268
Intron Length:
11305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
AATTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTCTCTTAATT
Flanking Amino Acid:
VAEKHIYNLMPLLLEAQSTP
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.8
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.9
78.8
38.6
Minor 5ss
36
-1.6
2.7
37.9
40
Minor BPS
75.6
0.88
1.2
84.73
36.1

Associated Gene:

Gene:
CACUL1
Ensembl Gene ID:
ENSAPLG00000006462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006709
30548043 - 30592608
44566