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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30567372_30572364_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30567372 - 30572364
Intron Length:
4993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TCTGTCTTATTT
Flanking Amino Acid:
QSIVPLFIYMNKFYIETKLN
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
58.9
0.36
1.7
74.56
43.3

Associated Gene:

Gene:
CACUL1
Ensembl Gene ID:
ENSAPLG00000006462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006709
30548043 - 30592608
44566