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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30572461_30581656_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30572461 - 30581656
Intron Length:
9196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACAACCTGACTT
Flanking Amino Acid:
HLERVSKELQASPPDLYIER
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.74
0.9
77.3
37
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
47.5
-0.1
1.7
60.9
42.8

Associated Gene:

Gene:
CACUL1
Ensembl Gene ID:
ENSAPLG00000006462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006709
30548043 - 30592608
44566