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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30581760_30586191_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30581760 - 30586191
Intron Length:
4432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TGTTCCTATATT
Flanking Amino Acid:
YIPISYEQIYSCVYKCVCQQ
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
59.7
0.39
2
80.7
41.2

Associated Gene:

Gene:
CACUL1
Ensembl Gene ID:
ENSAPLG00000006462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006709
30548043 - 30592608
44566