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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30611745_30621084_R

Intron Information:

Intron Rank:
155440
Intron Class:
major
Intron Phase:
Intron Coordinates:
30611745 - 30621084
Intron Length:
9340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATCTTACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81
0.7
0.8
76.3
32.3
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
54
0.2
1.9
76.01
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031130
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039420
30611685 - 30640856
29172