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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30613761_30621084_R

Intron Information:

Intron Rank:
155444
Intron Class:
major
Intron Phase:
Intron Coordinates:
30613761 - 30621084
Intron Length:
7324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGGAACTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
86.2
0.82
0.7
84.7
23
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
66.7
0.6
1.6
79.01
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031130
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045675
30613677 - 30621150
7474