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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3063287_3074138_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3063287 - 3074138
Intron Length:
10852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
SVSRSSNISKAGSPTSISAP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.2
0.7
0.8
75.2
34.1
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
MARCHF8
Ensembl Gene ID:
ENSAPLG00000003953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021450
3015875 - 3084036
68162
ENSAPLT00000004049
3036300 - 3084036
47737
ENSAPLT00000037914
3053420 - 3084036
30617
ENSAPLT00000022214
3015875 - 3084036
68162