About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30658878_30689427_R

Intron Information:

Intron Rank:
155433
Intron Class:
major
Intron Phase:
Intron Coordinates:
30658878 - 30689427
Intron Length:
30550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTTTCTGTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
77.9
0.63
0.9
72
38
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
49.9
-0
2.4
71.5
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031130
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017493
30646559 - 30689732
43174