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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30692775_30704218_R

Intron Information:

Intron Rank:
143399
Intron Class:
major
Intron Phase:
Intron Coordinates:
30692775 - 30704218
Intron Length:
11444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTGTCTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTTTCCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.8
34.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.9
0.63
0.8
70.1
36.5
Minor 5ss
35.5
-1.6
3.2
47.5
42.3
Minor BPS
66.4
0.59
1.9
84.73
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024452
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031546
30691840 - 30705392
13553