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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30704391_30704882_R

Intron Information:

Intron Rank:
143398
Intron Class:
major
Intron Phase:
Intron Coordinates:
30704391 - 30704882
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGGGATGT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
59.8
41.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
33.3
-1.9
3.4
47.1
48.3
Minor BPS
55.4
0.25
1.9
77.31
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024452
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028318
30704171 - 30705392
1222