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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30704391_30708382_R

Intron Information:

Intron Rank:
143400
Intron Class:
major
Intron Phase:
Intron Coordinates:
30704391 - 30708382
Intron Length:
3992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
75.7
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
41.4
-1
3.3
55.7
43.3
Minor BPS
55.4
0.25
1.9
77.31
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024452
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044698
30704171 - 30708675
4505