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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30729141_30732537_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30729141 - 30732537
Intron Length:
3397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ACTTGCTTATCC
Flanking Amino Acid:
ESEWRRAPVERDWRRGEARD
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
81.7
0.71
0.8
77.2
37.1
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
55.9
0.16
2
68.36
43.4

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036