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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30734395_30735375_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30734395 - 30735375
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCCAACTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATTT
Flanking Amino Acid:
QRLREEQLLKEREEKERIER
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.7
0.51
0.9
65.4
35.7
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
68.9
0.67
1.5
82.89
39.2

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036