About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30735530_30736177_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30735530 - 30736177
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
LKASRRTVYEDKLKQFQERL
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036