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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30736683_30737649_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30736683 - 30737649
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
QERLKNQEKKIDYFERAKRL
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.7
0.65
0.9
78.2
35
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036