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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30741611_30741932_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30741611 - 30741932
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACACCT
Flanking Amino Acid:
VDAARHCDLQVRLDHTTRTL
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.7
0.56
1.1
78.1
34.2
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
51.2
0.12
2.1
80.84
40.8

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036