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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3074219_3074520_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3074219 - 3074520
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTCCACT
Flanking Amino Acid:
SVTPSNQDICSSSAVFSECC
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
72.8
0.51
1
66.3
39.8
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
51.9
0.14
2.2
81.08
40.7

Associated Gene:

Gene:
MARCHF8
Ensembl Gene ID:
ENSAPLG00000003953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021450
3015875 - 3084036
68162