Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30742723_30743509_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

30742723 - 30743509

Intron Length:

787

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

AGGATTTTGATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAG

U12 Branch Point Sequence:

GATTAAGTAACT

Flanking Amino Acid:

PLKLCSRVSKVLNWVKDQAE

Intron Amino Acid Position:

410

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

72.5

0.56

1.5

71.7

44.6

Major PPT

58.8

0.2

1.1

45.3

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

47.5

-0.1

2.4

72.69

43.2

Associated Gene:

Gene:

EIF3A

Ensembl Gene ID:

ENSAPLG00000006637

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006941

30727502 - 30756537

29036