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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30743615_30744648_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30743615 - 30744648
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TGGTTGATGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGGTTGATG
Flanking Amino Acid:
PTRGSLINDMVRFNVVQYVV
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
59.4
0.21
1.1
55.3
44.6
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
48.4
-0.2
2.5
65.9
42.8

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036