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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30746012_30747080_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30746012 - 30747080
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
ACTTCCTAAAAG
Flanking Amino Acid:
DSAISMELWQEAFKAVEDIH
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
57.6
0.1
1.9
62.9
44.8

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036