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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30747281_30748559_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30747281 - 30748559
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ACATTCTTAATT
Flanking Amino Acid:
ERLYHDIAQQAFKFCLQYTR
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.9
0.81
0.8
80.6
37
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
73.6
0.82
1.1
78.58
38

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036