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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30748724_30752990_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30748724 - 30752990
Intron Length:
4267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
TTCCCAACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
CCGTTCCCAACT
Flanking Amino Acid:
EDLDNIQTPESVLLSAVSGE
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
69.7
0.44
0.8
63.7
31.5
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
48
-0
1.9
64.04
46.3

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036