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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30753128_30753327_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30753128 - 30753327
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGGCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GATAACTTCACA
Flanking Amino Acid:
LYQYKNICQQVNIKSLEDVV
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.4
43.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
61.1
0.25
1
56.7
38.7
Minor 5ss
35.3
-1.7
3.8
55.3
48.9
Minor BPS
49.6
-0
2
63.62
41.8

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036