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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30753519_30756488_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30753519 - 30756488
Intron Length:
2970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TAGATTTTACTT
Flanking Amino Acid:
RPENALKRANEFLEVGKKQP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
67.6
39.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
85.6
0.8
0.8
82.6
33.4
Minor 5ss
29.9
-2.3
3
37.8
39.6
Minor BPS
49.8
0.06
1.6
64.67
40.7

Associated Gene:

Gene:
EIF3A
Ensembl Gene ID:
ENSAPLG00000006637
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006941
30727502 - 30756537
29036