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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3075367_3077319_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3075367 - 3077319
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
GCTTCTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGCTTCTGATTC
Flanking Amino Acid:
SPVSTSGDTCRICHCEGDDE
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.2
35.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.5
0.51
1
69.5
40.8
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
49.2
-0
1.7
59.24
40.3

Associated Gene:

Gene:
MARCHF8
Ensembl Gene ID:
ENSAPLG00000003953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021450
3015875 - 3084036
68162