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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30761347_30761520_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30761347 - 30761520
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTCTATAAAA
Flanking Amino Acid:
RKAYLAGSIKDIVSQFGMET
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
80
33
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
84.7
0.78
0.6
83.9
24.2
Minor 5ss
33.4
-1.9
2.4
38.7
39
Minor BPS
67.9
0.56
1.7
81.76
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007524
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007825
30757847 - 30765061
7215