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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30762076_30762793_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30762076 - 30762793
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGATG
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATCCTCTCAAAA
Flanking Amino Acid:
EEVEALKACTGYIAGFTDSE
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.2
44.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
34.6
-1.8
3.5
47.9
47.8
Minor BPS
49.9
-0
1.6
60.67
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007524
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007825
30757847 - 30765061
7215