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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30763575_30764305_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30763575 - 30764305
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTTCTTCAAG
Flanking Amino Acid:
PDKSDSQVIKDISLKTKEIL
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
82.6
24.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.4
0.62
1
75.9
38.4
Minor 5ss
37.7
-1.4
3
49
47.2
Minor BPS
53.5
-0
2
63.83
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007524
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007825
30757847 - 30765061
7215