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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30772133_30773064_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30772133 - 30773064
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAACCCAAACT
Flanking Amino Acid:
LPAVLMHFVERSNFPKTSRA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.7
0.33
1.1
61.2
44.1
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
49.7
0.06
2
72.12
43.8

Associated Gene:

Gene:
SFXN4
Ensembl Gene ID:
ENSAPLG00000007674
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007961
30771291 - 30779617
8327