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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30774258_30774701_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30774258 - 30774701
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
VKKLLPVPLFGLTSAFTVVA
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.4
0.75
0.8
77.7
36.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
SFXN4
Ensembl Gene ID:
ENSAPLG00000007674
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007961
30771291 - 30779617
8327