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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3077501_3081398_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3077501 - 3081398
Intron Length:
3898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GATTTCTTGACA
Flanking Amino Acid:
METKLKPLRKWEKLQMTASE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
73.4
0.53
1
68.9
41.7
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
74
0.75
1.1
75.79
34.8

Associated Gene:

Gene:
MARCHF8
Ensembl Gene ID:
ENSAPLG00000003953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021450
3015875 - 3084036
68162
ENSAPLT00000004049
3036300 - 3084036
47737
ENSAPLT00000037914
3053420 - 3084036
30617
ENSAPLT00000022214
3015875 - 3084036
68162