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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30776196_30776279_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30776196 - 30776279
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTGCTTATAATT
Flanking Amino Acid:
VQAKQIFLCQFAFHTYTTAF
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.6
0.89
0.6
85
22.5
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
55.8
0.26
1.6
73.52
37.9

Associated Gene:

Gene:
SFXN4
Ensembl Gene ID:
ENSAPLG00000007674
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007961
30771291 - 30779617
8327