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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30777354_30778126_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30777354 - 30778126
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGTTACTGAAAT
Flanking Amino Acid:
KIIPGFFRPPAFLPLTLPLV
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
90.4
0.91
0.6
88.8
20.5
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
61
0.42
1.8
80.81
39.8

Associated Gene:

Gene:
SFXN4
Ensembl Gene ID:
ENSAPLG00000007674
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007961
30771291 - 30779617
8327