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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30778182_30778269_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30778182 - 30778269
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
QTKKAFLLSLSSIHPDTGKI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
SFXN4
Ensembl Gene ID:
ENSAPLG00000007674
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007961
30771291 - 30779617
8327