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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30781881_30783024_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30781881 - 30783024
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TGCTTCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTGCTTCATT
Flanking Amino Acid:
VLLEGPGIALRGLFIIDPNG
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
79.7
0.67
0.9
73.1
36
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
57.4
0.31
2.2
80.32
42.1

Associated Gene:

Gene:
PRDX3
Ensembl Gene ID:
ENSAPLG00000021984
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032209
30781040 - 30786154
5115