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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30785789_30785881_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30785789 - 30785881
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCGCA
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
TTTTCTGTCCCC
Flanking Amino Acid:
QLLAHRQLSLGASRLAPAVT
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66
40.2
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
76.7
0.6
0.8
73.7
31.4
Minor 5ss
36.2
-1.6
3.3
39.6
45.9
Minor BPS
38.3
-0.9
3.8
69.26
43

Associated Gene:

Gene:
PRDX3
Ensembl Gene ID:
ENSAPLG00000021984
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032209
30781040 - 30786154
5115