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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30905783_30926440_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
30905783 - 30926440
Intron Length:
20658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCATCTGAGATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTTTTCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
57
0.16
1.1
53.9
40.5
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
49.1
0.01
1.8
66.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007885
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008254
30896620 - 30949153
52534