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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30931324_30935909_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30931324 - 30935909
Intron Length:
4586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTATCTTTCATT
Flanking Amino Acid:
EDLHRENTVYRDLKPENILL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.5
0.82
0.7
81
29.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
60.9
0.43
1.7
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007885
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021554
30925781 - 30949153
23373
ENSAPLT00000008254
30896620 - 30949153
52534