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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30946298_30948688_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30946298 - 30948688
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTGAGATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTAATT
Flanking Amino Acid:
GMLDPPFVPDPRAVYCKDVL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
57.3
0.16
1.1
53.7
40.7
Minor 5ss
38.5
-1.3
2.7
48.6
40.2
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007885
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021554
30925781 - 30949153
23373
ENSAPLT00000008254
30896620 - 30949153
52534