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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30949666_30950464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30949666 - 30950464
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGCAGAAGCT
Flanking Amino Acid:
GLLQRIFKRQHQNNSKSSPN
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.6
0.69
0.7
75.9
26.4
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
40.5
-0.6
2.6
68.66
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031123
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032996
30949534 - 30950563
1030